These discoveries were made long before the 3.3 beta. (At that time I was shadowing The Boss and his mean gang of DECE throat-cutters in the outer rim, in order to prevent them finding Raxxla and then keeping it for themselves. And also, I must admit, because he is well known for setting up great campfires with nice music, tons of booze and a dozen of nude girls jumping over the fire... Very funnier than wishy-washy Dr Kai's and Co... Aaah... happy past times.) Yeah, some sort of corruption of the database, must be.Almost all of these red dots are systems I discovered, tagged and sold. The system map icons appear in white and I can open them.Funny!did you perhaps play beta and these are systems you visited then that were not deleted on going to the released version?
As well as the bookmark issue, if galmap is also not reporting previously visited systems then you should most definitely raise a bug report!
Sounds like your database has become corrupted somehow.
If so, there are tons of Raxxlas then...I think by now it's obvious there a 50% chance of raxxla or not